Correlation Catalog M. tuberculosis H37Rv: Rv3907c - poly(A) polymerase pcnA

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Distribution of gene correlation: Rv3907c vs. all genes ?
COG Categories ?

Information storage and processing

J Translation, ribosomal structure and biogenesis

K Transcription

I DNA replication, recombination and repair

Cellular Processes

D Cell division and chromosome partitioning

O Posttranslational modification, protein turnover, chaperones

M Cell envelope biogenesis, outer membrane

N Cell motility and secretion

P Inorganic transport and metabolism

T Signal transduction mechanisms

Metabolism

C Energy production and conversion

G Carbohydrate transport and metabolism

E Amino acid transport and metabolism

F Nucleotide transport and metabolism

H Coenzyme metabolism

I Lipid metabolism

Q Secondary metabolites biosynthesis, transport and catabolism

Poorly characterized

R General function predicton only

S Unknown function

X No COG assigned

Genes with negative correlation ?

 Categories Enriched ?: None

Gene ?DescriptionLinks ?COG ?Correlation ?
Rv1868 conserved hypothetical protein   -0.43708
Rv1862 alcohol dehydrogenase adhA   -0.42309
Rv3087 conserved hypothetical protein   -0.42174
Rv0937c conserved hypothetical protein   -0.41786
Rv1880c cytochrome P450 140 cyp140   -0.41162
Rv3614c conserved hypothetical protein   -0.40499
Rv3616c conserved alanine and glycine rich protein   -0.40296
Rv2485c carboxylesterase lipQ   -0.40214
Rv0751c 3-hydroxyisobutyrate dehydrogenase mmsB   -0.39895
Rv3128c conserved hypothetical protein   -0.3957
Rv3615c conserved hypothetical protein   -0.39481
Rv0120c elongation factor G fusA2   -0.39323
Rv1829 conserved hypothetical protein   -0.39319
Rv1331 conserved hypothetical protein   -0.38245
Rv2285 conserved hypothetical protein   -0.38119
Rv0334 alpha-D-glucose-1-phosphate thymidylyltransferase rmlA   -0.37912
Rv3734c conserved hypothetical protein   -0.37498
Rv3088 conserved hypothetical protein   -0.37034
Rv1672c conserved membrane transport protein   -0.3702
Rv0064 conserved membrane protein   -0.37
Rv3366 tRNA/rRNA methylase spoU   -0.36843
Rv1058 medium chain fatty-acid-CoA ligase fadD14   -0.36779
Rv0118c oxalyl-CoA decarboxylase oxcA   -0.3673
Rv2612c phosphatidylinositol synthase pgsA1   -0.36622
Rv2483c bifunctionnal phospholipid biosynthesis enzyme plsC   -0.36435
Rv1530 alcohol dehydrogenase adh   -0.36402
Rv2500c acyl-CoA dehydrogenase fadE19   -0.36296
Rv1254 acyltransferase   -0.36231
Rv2042c conserved hypothetical protein   -0.36028
Rv3241c conserved hypothetical protein   -0.36015
Rv2491 conserved hypothetical protein   -0.36006
Rv3089 fatty-acid-CoA ligase fadD13   -0.35933
Rv1497 esterase lipL   -0.35536
Rv2037c conserved membrane protein   -0.35503
Rv0320 hypothetical exported protein   -0.35485
Rv2218 lipoate biosynthesis protein A lipA   -0.35458
Rv1478 invasion-associated protein   -0.35417
Rv2338c molybdopterin biosynthesis protein moeW   -0.35172
Rv1620c transmembrane ATP-binding protein ABC transporter cydC   -0.3511
Rv1625c membrane-anchored adenylyl cyclase cya   -0.34994
Rv0518 hypothetical exported protein   -0.34976
Rv1027c transcriptional regulator kdpE   -0.34925
Rv0458 aldehyde dehydrogenase   -0.34788
Rv0580c conserved hypothetical protein   -0.34764
Rv1738 conserved hypothetical protein   -0.34631
Rv2632c conserved hypothetical protein   -0.34628
Rv0262c aminoglycoside 2-N-acetyltransferase aac   -0.34597
Rv3083 monooxygenase   -0.34543
Rv2270 lipoprotein lppN   -0.34479
Rv2495c dihydrolipoamide S-acetyltransferase E2 component pdhC   -0.34444
Rv0311 hypothetical protein   -0.34412
Rv0426c transmembrane protein   -0.34337
Rv2302 conserved hypothetical protein   -0.34305
Rv0981 mycobacterial persistence regulator mprA   -0.342
Rv1134 hypothetical protein   -0.33996
Rv2261c conserved hypothetical protein   -0.33936
Rv0272c hypothetical protein   -0.33879
Rv2364c GTP-binding protein era   -0.33712
Rv2501c acetyl-/propionyl-CoA carboxylase alpha subunit accA1   -0.33578
Rv0487 conserved hypothetical protein   -0.33508
Rv1879 conserved hypothetical protein   -0.33282
Rv1004c membrane protein   -0.33221
Rv3637 transposase   -0.33121
Rv2416c enhanced intracellular survival protein eis   -0.33079
Rv3437 conserved membrane protein   -0.33031
Rv3760 conserved membrane protein   -0.33021
Rv2484c conserved hypothetical protein   -0.32909
Rv3427c transposase   -0.32904
Rv1582c phiRv1 phage protein   -0.32892
Rv0786c conserved hypothetical protein   -0.32828
Rv0868c molybdenum cofactor biosynthesis protein D 2 moaD2   -0.32817
Rv0102 conserved membrane protein   -0.32811
Rv0278c PE-PGRS family protein   -0.32642
Rv0738 conserved hypothetical protein   -0.3245
Rv0168 hypothetical membrane protein yrbE1B   -0.32376
Rv0674 conserved hypothetical protein   -0.32287
Rv0679c conserved threonine rich protein   -0.32272
Rv1222 conserved hypothetical protein   -0.32218
Rv2340c PE-PGRS family protein   -0.32171
Rv0304c PPE family protein   -0.3215
Rv2740 conserved hypothetical protein   -0.32044
Rv0939 bifunctional 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/cyclase/dehydrase   -0.32036
Rv2575 conserved glycine rich membrane protein   -0.31958
Rv0856 conserved hypothetical protein   -0.31868
Rv1752 conserved hypothetical protein   -0.31671
Rv3059 cytochrome P450 136 cyp136   -0.31669
Rv2816c conserved hypothetical protein   -0.31668
Rv2170 conserved hypothetical protein   -0.31629
Rv3288c hypothetical protein usfY   -0.31625
Rv2237 conserved hypothetical protein   -0.31536
Rv2780 40 kda secreted L-alanine dehydrogenase ald   -0.31489
Rv3168 conserved hypothetical protein   -0.31459
Rv1090 cellulase celA2b   -0.31427
Rv0977 PE-PGRS family protein   -0.31414
Rv3287c anti-sigma factor rsbW   -0.31361
Rv2045c carboxylesterase lipT   -0.31267
Rv1777 cytochrome P450 144 cyp144   -0.31246
Rv1646 PE family protein   -0.31188
Rv3312c conserved hypothetical protein   -0.31068
Rv0874c conserved hypothetical protein   -0.30986
Rv3084 acetyl-hydrolase/esterase lipR   -0.30795
Rv1454c quinone reductase qor   -0.30771
Rv1138c oxidoreductase   -0.30701
Rv3086 zinc-type alcohol dehydrogenase adhD   -0.30687
Rv1393c monooxygenase   -0.30682
Rv1126c conserved hypothetical protein   -0.30618
Rv0960 conserved hypothetical protein   -0.30569
Rv1575 phiRv1 phage protein   -0.30518
Rv2262c conserved hypothetical protein   -0.30469
Rv0758 two component system sensor kinase phoR   -0.30411
Rv0368c conserved hypothetical protein   -0.30399
Rv3322c methyltransferase   -0.30368
Rv2686c antibiotic-transport membrane leucine and alanine and valine rich protein ABC transporter   -0.30293
Rv0202c transmembrane transport protein mmpL11   -0.30288
Rv0166 fatty-acid-CoA ligase fadD5   -0.30181
Rv3238c conserved membrane protein   -0.30099
Rv0450c transmembrane transport protein mmpL4   -0.30053
Rv2602 conserved hypothetical protein   -0.30013

Genes with positive correlation ?

 Categories Enriched ?: J

Gene ?DescriptionLinks ?COG ?Correlation ?
Rv2201 asparagine synthetase asnB   0.50588
Rv3679 anion transporter ATPase   0.49809
Rv3137 monophosphatase   0.49588
Rv3261 F420 biosynthesis protein fbiA   0.482
Rv2700 conserved secreted protein   0.47322
Rv2940c multifunctional mycocerosic acid synthase membrane-associated mas   0.46477
Rv1379 pyrimidine operon regulatory protein pyrR   0.46233
Rv3737 conserved membrane protein   0.45782
Rv0626 conserved hypothetical protein   0.44994
Rv3485c short-chain type dehydrogenase/reductase   0.44442
Rv2843 conserved alanine rich membrane protein   0.44143
Rv1009 resuscitation-promoting factor rpfB   0.4404
Rv3655c conserved hypothetical protein   0.43971
Rv2909c 30S ribosomal protein S16 rpsP   0.43769
Rv3455c tRNA pseudouridine synthase A truA   0.43418
Rv0237 lipoprotein lpqI   0.42566
Rv0429c polypeptide deformylase def   0.42508
Rv3721c DNA polymerase III gamma/tau subunit dnaZ/X   0.42395
Rv2691 trk system potassium uptake protein ceoB   0.42215
Rv3441c phospho-sugar mutase mrsA   0.42124
Rv2211c aminomethyltransferase gcvT   0.4209
Rv3013 conserved hypothetical protein   0.41941
Rv1483 3-oxoacyl-[acyl-carrier protein] reductase fabG1   0.4159
Rv2931 phenolpthiocerol synthesis type-I polyketide synthase ppsA   0.41386
Rv2959c methyltransferase/methylase   0.4129
Rv1644 23S rRNA methyltransferase tsnR   0.41001
Rv0635 conserved hypothetical protein   0.40981
Rv3771c conserved hypothetical protein   0.40317
Rv1589 biotin synthetase bioB   0.40244
Rv3373 enoyl-CoA hydratase echA18   0.40221
Rv0641 50S ribosomal protein L1 rplA   0.40137
Rv0721 30S ribosomal protein S5 rpsE   0.40132
Rv3265c dTDP-rha:a-D-glcnac-diphosphoryl polyprenol, a-3-L-rhamnosyl transferase wbbL1   0.40112
Rv3883c membrane-anchored mycosin mycP1   0.40013
Rv0545c low affinity inorganic phosphate transporter membrane protein pitA   0.39851
Rv3277 conserved membrane protein   0.3985
Rv2697c deoxyuridine 5-triphosphate nucleotidohydrolase dut   0.39674
Rv0720 50S ribosomal protein L18 rplR   0.39478
Rv2213 aminopeptidase pepB   0.39464
Rv3457c DNA-directed RNA polymerase alpha chain rpoA   0.3941
Rv3135 PPE family protein   0.39215
Rv0719 50S ribosomal protein L6 rplF   0.39137
Rv2509 short-chain type dehydrogenase/reductase   0.38995
Rv2121c ATP phosphoribosyltransferase hisG   0.38824
Rv0651 50S ribosomal protein L10 rplJ   0.38665
Rv2450c resuscitation-promoting factor rpfE   0.38635
Rv2889c elongation factor tsf   0.38541
Rv3580c cysteinyl-tRNA synthetase 1 cysS1   0.38526
Rv0705 30S ribosomal protein S19 rpsS   0.38393
Rv2933 phenolpthiocerol synthesis type-I polyketide synthase ppsC   0.38369
Rv1227c transmembrane protein   0.38219
Rv2917 conserved alanine and arginine rich protein   0.38214
Rv2887 transcriptional regulator   0.38187
Rv3747 conserved hypothetical protein   0.38185
Rv3405c transcriptional regulator   0.37908
Rv1143 alpha-methylacyl-CoA racemase mcr   0.37898
Rv1591 transmembrane protein   0.37806
Rv1381 dihydroorotase pyrC   0.3778
Rv3901c membrane protein   0.37764
Rv3443c 50S ribosomal protein L13 rplM   0.37711
Rv0203 hypothetical exported protein   0.37643
Rv2439c glutamate 5-kinase protein proB   0.37605
Rv3671c membrane-associated serine protease   0.37575
Rv0646c lipase/esterase lipG   0.37531
Rv2569c conserved hypothetical protein   0.37348
Rv2845c prolyl-tRNA synthetase proS   0.37312
Rv2883c uridylate kinase pyrH   0.37286
Rv0707 30S ribosomal protein S3 rpsC   0.37183
Rv2783c bifunctional polyribonucleotide nucleotidyltransferase gpsI   0.3713
Rv2888c amidase amiC   0.37126
Rv3011c glutamyl-tRNA(gln) amidotransferase subunit A gatA   0.3707
Rv3459c 30S ribosomal protein S11 rpsK   0.37021
Rv0723 50S ribosomal protein L15 rplO   0.36942
Rv2911 D-alanyl-D-alanine carboxypeptidase dacB2   0.36893
Rv3803c secreted fibronectin-binding protein antigen protein fbpD   0.36866
Rv2443 C4-dicarboxylate-transport transmembrane protein dctA   0.36814
Rv3923c ribonuclease P protein component rnpA   0.36738
Rv2907c 16S rRNA processing protein rimM   0.36701
Rv0951 succinyl-CoA synthetase beta chain sucC   0.36641
Rv2782c zinc protease pepR   0.36635
Rv2837c conserved hypothetical protein   0.36625
Rv0431 tuberculin related peptide   0.36595
Rv2996c D-3-phosphoglycerate dehydrogenase serA1   0.3659
Rv2930 fatty-acid-CoA ligase fadD26   0.36539
Rv2563 glutamine-transport transmembrane protein ABC transporter   0.36524
Rv3456c 50S ribosomal protein L17 rplQ   0.36445
Rv3276c phosphoribosylaminoimidazole carboxylase ATPase subunit purK   0.36427
Rv1241 conserved hypothetical protein   0.36387
Rv3908 conserved hypothetical protein   0.3624
Rv2462c trigger factor protein tig   0.36207
Rv3909 conserved hypothetical protein   0.36106
Rv2451 hypothetical proline and serine rich protein   0.36094
Rv0483 lipoprotein lprQ   0.36066
Rv0701 50S ribosomal protein L3 rplC   0.35993
Rv3623 lipoprotein lpqG   0.35961
Rv3739c PPE family protein   0.35872
Rv2937 daunorubicin-dim-transport membrane protein ABC transporter drrB   0.35805
Rv3227 3-phosphoshikimate 1-carboxyvinyltransferase aroA   0.35791
Rv2518c lipoprotein lppS   0.35785
Rv3442c 30S ribosomal protein S9 rpsI   0.35773
Rv0813c conserved hypothetical protein   0.35704
Rv0715 50S ribosomal protein L24 rplX   0.3568
Rv2421c nicotinate-nucleotide adenylyltransferase nadD   0.35669
Rv2768c PPE family protein   0.35611
Rv3653 PE-PGRS family protein   0.35597
Rv1177 ferredoxin fdxC   0.35558
Rv1175c NADPH dependent 2,4-dienoyl-CoA reductase fadH   0.35484
Rv3505 acyl-CoA dehydrogenase fadE27   0.35437
Rv3271c conserved membrane protein   0.35339
Rv0466 conserved hypothetical protein   0.3532
Rv3003c acetolactate synthase large subunit ilvB1   0.35294
Rv0643c methoxy mycolic acid synthase 3 mmaA3   0.35214
Rv0683 30S ribosomal protein S7 rpsG   0.3521
Rv1590 conserved hypothetical protein   0.35171
Rv1420 excinuclease ABC subunit C uvrC   0.35067
Rv3673c membrane-anchored thioredoxin   0.35016
Rv2533c N utilization substance protein B nusB   0.34973
Rv0684 elongation factor G fusA1   0.34955
Rv0639 transcription antitermination protein nusG   0.34888
Rv0718 30S ribosomal protein S8 rpsH   0.34879
Rv1597 hypothetical protein   0.34879
Rv1015c 50S ribosomal protein L25 rplY   0.348
Rv1609 anthranilate synthase component I trpE   0.34755
Rv2141c conserved hypothetical protein   0.34744
Rv0668 DNA-directed RNA polymerase beta chain rpoC   0.34729
Rv2357c glycyl-tRNA synthetase glyS   0.34726
Rv3465 dTDP-4-dehydrorhamnose 3,5-epimerase rmlC   0.34687
Rv2903c signal peptidase I lepB   0.34623
Rv3922c hemolysin   0.34417
Rv2739c alanine rich transferase   0.3435
Rv0867c resuscitation-promoting factor rpfA   0.34261
Rv2932 phenolpthiocerol synthesis type-I polyketide synthase ppsB   0.34166
Rv2487c PE-PGRS family protein   0.34065
Rv3804c secreted fibronectin-binding protein antigen fbpA   0.34039
Rv0047c conserved hypothetical protein   0.34027
Rv0567 methyltransferase/methylase   0.34008
Rv2936 daunorubicin-dim-transport ATP-binding protein ABC transporter drrA   0.34
Rv1193 fatty-acid-CoA ligase fadD36   0.33998
Rv3628 inorganic pyrophosphatase ppa   0.33985
Rv2445c nucleoside diphosphate kinase ndkA   0.33895
Rv1617 pyruvate kinase pykA   0.33882
Rv3460c 30S ribosomal protein S13 rpsM   0.33783
Rv0547c oxidoreductase   0.3365
Rv1194c conserved hypothetical protein   0.33618
Rv3603c conserved alanine and leucine rich protein   0.33586
Rv2949c conserved hypothetical protein   0.33559
Rv1561 conserved hypothetical protein   0.33548
Rv0477 conserved secreted protein   0.33442
Rv0667 DNA-directed RNA polymerase beta chain rpoB   0.33423
Rv1484 NADH-dependent enoyl-[acyl-carrier-protein] reductase inhA   0.33367
Rv0703 50S ribosomal protein L23 rplW   0.33359
Rv0652 50S ribosomal protein L7/L12 rplL   0.33319
Rv1778c hypothetical protein   0.33303
Rv3911 alternative RNA polymerase sigma factor sigM   0.33281
Rv0706 50S ribosomal protein L22 rplV   0.33266
Rv1779c hypothetical membrane protein   0.33201
Rv3234c conserved hypothetical protein   0.33151
Rv3341 homoserine O-acetyltransferase metA   0.33134
Rv3454 conserved membrane protein   0.33073
Rv3523 lipid carrier protein or keto acyl-CoA thiolase ltp3   0.33045
Rv3102c cell division ATP-binding protein ftsE   0.33026
Rv1485 ferrochelatase hemZ   0.32831
Rv2890c 30S ribosomal protein S2 rpsB   0.32771
Rv0461 transmembrane protein   0.32711
Rv2952 methyltransferase/methylase   0.32633
Rv2463 esterase/lipase lipP   0.32611
Rv3659c conserved hypothetical protein   0.32595
Rv1361c PPE family protein   0.32517
Rv0708 50S ribosomal protein L16 rplP   0.32511
Rv2839c translation initiation factor IF-2 infB   0.32445
Rv2950c fatty-acid-CoA ligase fadD29   0.32425
Rv2793c tRNA pseudouridine synthase B truB   0.32391
Rv3524 conserved membrane protein   0.32379
Rv3396c GMP synthase guaA   0.32358
Rv2520c conserved membrane protein   0.32358
Rv2307c conserved hypothetical protein   0.32343
Rv2838c ribosome-binding factor A rbfA   0.3223
Rv3462c translation initiation factor IF-1 infA   0.32224
Rv3458c 30S ribosomal protein S4 rpsD   0.32223
Rv3658c conserved membrane protein   0.32093
Rv3093c oxidoreductase   0.32054
Rv2065 precorrin-8x methylmutase cobH   0.31967
Rv3511 PE-PGRS family protein   0.31939
Rv2068c class A beta-lactamase blaC   0.31881
Rv3722c conserved hypothetical protein   0.31866
Rv3481c membrane protein   0.31821
Rv2993c 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase   0.31732
Rv2916c signal recognition particle protein ffh   0.31709
Rv3001c ketol-acid reductoisomerase ilvC   0.317
Rv0627 conserved hypothetical protein   0.31683
Rv0700 30S ribosomal protein S10 rpsJ   0.31639
Rv3551 CoA-transferase alpha subunit   0.31553
Rv1863c conserved membrane protein   0.31548
Rv0053 30S ribosomal protein S6 rpsF   0.31495
Rv0731c conserved hypothetical protein   0.31473
Rv2183c conserved hypothetical protein   0.31467
Rv2117 conserved hypothetical protein   0.31432
Rv3520c coenzyme F420-dependent oxidoreductase   0.31378
Rv2048c hypothetical protein   0.31332
Rv0638 preprotein translocase secE1   0.31219
Rv3678c conserved hypothetical protein   0.31139
Rv3598c lysyl-tRNA synthetase 1 lysS   0.31073
Rv3329 aminotransferase   0.30966
Rv2595 conserved hypothetical protein   0.30956
Rv2908c conserved hypothetical protein   0.30955
Rv3769 hypothetical protein   0.30953
Rv0685 iron-regulated elongation factor tu tuf   0.30948
Rv3589 adenine glycosylase mutY   0.30907
Rv0613c hypothetical protein   0.30834
Rv2904c 50S ribosomal protein L19 rplS   0.30789
Rv3539 PPE family protein   0.30722
Rv1811 Mg2+ transport ATPase C mgtC   0.30664
Rv0704 50S ribosomal protein L2 rplB   0.30645
Rv0315 beta-1,3-glucanase precursor   0.30627
Rv1011 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase ispE   0.30587
Rv3924c 50S ribosomal protein L34 rpmH   0.30587
Rv2205c conserved hypothetical protein   0.30479
Rv1571 conserved hypothetical protein   0.30478
Rv0249c succinate dehydrogenase membrane anchor subunit   0.30399
Rv2523c holo-[acyl-carrier protein] synthase acpS   0.30377
Rv2582 peptidyl-prolyl-cis-trans-isomerase B ppiB   0.30327
Rv2478c conserved hypothetical protein   0.30273
Rv3657c conserved alanine rich membrane protein   0.3025
Rv0803 phosphoribosylformylglycinamidine synthase II purL   0.30248
Rv3893c PE family protein   0.30232
Rv0647c conserved hypothetical protein   0.30201
Rv3027c conserved hypothetical protein   0.30167
Rv2947c polyketide synthase pks15   0.3012
Rv0125 serine protease pepA   0.30104
Rv2833c sn-glycerol-3-phosphate-binding lipoprotein ugpB   0.30054
Rv0922 transposase   0.30046
Rv3599c hypothetical short protein   0.30041
Rv2067c conserved hypothetical protein   0.3003