Correlation Catalog M. tuberculosis H37Rv: Rv3286c - RNA polymerase sigma factor sigF

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Rv3287c >>
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Distribution of gene correlation: Rv3286c vs. all genes ?
COG Categories ?

Information storage and processing

J Translation, ribosomal structure and biogenesis

K Transcription

I DNA replication, recombination and repair

Cellular Processes

D Cell division and chromosome partitioning

O Posttranslational modification, protein turnover, chaperones

M Cell envelope biogenesis, outer membrane

N Cell motility and secretion

P Inorganic transport and metabolism

T Signal transduction mechanisms

Metabolism

C Energy production and conversion

G Carbohydrate transport and metabolism

E Amino acid transport and metabolism

F Nucleotide transport and metabolism

H Coenzyme metabolism

I Lipid metabolism

Q Secondary metabolites biosynthesis, transport and catabolism

Poorly characterized

R General function predicton only

S Unknown function

X No COG assigned

Genes with negative correlation ?

 Categories Enriched ?: J

Gene ?DescriptionLinks ?COG ?Correlation ?
Rv1609 anthranilate synthase component I trpE   -0.45809
Rv0249c succinate dehydrogenase membrane anchor subunit   -0.44704
Rv0203 hypothetical exported protein   -0.4437
Rv0781 protease II ptrBa   -0.44336
Rv1111c conserved hypothetical protein   -0.43906
Rv3747 conserved hypothetical protein   -0.43854
Rv2213 aminopeptidase pepB   -0.43527
Rv0429c polypeptide deformylase def   -0.4324
Rv0567 methyltransferase/methylase   -0.42903
Rv0720 50S ribosomal protein L18 rplR   -0.42559
Rv0705 30S ribosomal protein S19 rpsS   -0.42132
Rv2909c 30S ribosomal protein S16 rpsP   -0.42094
Rv3443c 50S ribosomal protein L13 rplM   -0.41908
Rv2929 hypothetical protein   -0.41889
Rv2272 conserved membrane protein   -0.41655
Rv0718 30S ribosomal protein S8 rpsH   -0.41614
Rv2959c methyltransferase/methylase   -0.40933
Rv3924c 50S ribosomal protein L34 rpmH   -0.40892
Rv2067c conserved hypothetical protein   -0.4085
Rv3679 anion transporter ATPase   -0.40608
Rv3673c membrane-anchored thioredoxin   -0.40498
Rv1177 ferredoxin fdxC   -0.40474
Rv2563 glutamine-transport transmembrane protein ABC transporter   -0.40334
Rv2700 conserved secreted protein   -0.40311
Rv2068c class A beta-lactamase blaC   -0.40235
Rv2843 conserved alanine rich membrane protein   -0.40149
Rv2951c oxidoreductase   -0.40116
Rv0708 50S ribosomal protein L16 rplP   -0.39956
Rv1227c transmembrane protein   -0.39953
Rv1361c PPE family protein   -0.3991
Rv1175c NADPH dependent 2,4-dienoyl-CoA reductase fadH   -0.39882
Rv0867c resuscitation-promoting factor rpfA   -0.39839
Rv0704 50S ribosomal protein L2 rplB   -0.39772
Rv1379 pyrimidine operon regulatory protein pyrR   -0.3958
Rv0643c methoxy mycolic acid synthase 3 mmaA3   -0.39553
Rv0723 50S ribosomal protein L15 rplO   -0.39348
Rv0683 30S ribosomal protein S7 rpsG   -0.39167
Rv2467 aminopeptidase N pepN   -0.3911
Rv2529 hypothetical protein   -0.39004
Rv2911 D-alanyl-D-alanine carboxypeptidase dacB2   -0.38985
Rv2523c holo-[acyl-carrier protein] synthase acpS   -0.38857
Rv3646c DNA topoisomerase I topA   -0.38847
Rv1980c immunogenic protein mpt64   -0.38611
Rv3461c 50S ribosomal protein L36 rpmJ   -0.38611
Rv0483 lipoprotein lprQ   -0.38594
Rv3721c DNA polymerase III gamma/tau subunit dnaZ/X   -0.38473
Rv1589 biotin synthetase bioB   -0.38357
Rv0701 50S ribosomal protein L3 rplC   -0.38327
Rv2276 cytochrome P450 121 cyp121   -0.38008
Rv2114 hypothetical protein   -0.37905
Rv0706 50S ribosomal protein L22 rplV   -0.37802
Rv2739c alanine rich transferase   -0.37727
Rv0716 50S ribosomal protein L5 rplE   -0.37541
Rv0009 iron-regulated peptidyl-prolyl-cis-trans-isomerase A ppiA   -0.37537
Rv3922c hemolysin   -0.37518
Rv3227 3-phosphoshikimate 1-carboxyvinyltransferase aroA   -0.37471
Rv1523 methyltransferase   -0.37459
Rv2691 trk system potassium uptake protein ceoB   -0.37431
Rv0957 bifunctional purine biosynthesis protein purH   -0.37379
Rv0198c zinc metalloprotease   -0.37361
Rv0719 50S ribosomal protein L6 rplF   -0.37336
Rv3804c secreted fibronectin-binding protein antigen fbpA   -0.37312
Rv2907c 16S rRNA processing protein rimM   -0.37166
Rv2069 RNA polymerase sigma factor sigC   -0.37091
Rv1241 conserved hypothetical protein   -0.36974
Rv0635 conserved hypothetical protein   -0.3691
Rv0947c mycolyl transferase   -0.36873
Rv0707 30S ribosomal protein S3 rpsC   -0.36759
Rv2940c multifunctional mycocerosic acid synthase membrane-associated mas   -0.36715
Rv2833c sn-glycerol-3-phosphate-binding lipoprotein ugpB   -0.3668
Rv3442c 30S ribosomal protein S9 rpsI   -0.36677
Rv2947c polyketide synthase pks15   -0.36605
Rv0073 glutamine-transport ATP-binding protein ABC transporter   -0.36521
Rv2329c nitrite extrusion protein 1 narK1   -0.36492
Rv0583c lipoprotein lpqN   -0.36424
Rv0780 phosphoribosylaminoimidazole-succinocarboxamide synthase purC   -0.36271
Rv0545c low affinity inorganic phosphate transporter membrane protein pitA   -0.36126
Rv0469 mycolic acid synthase umaA   -0.36061
Rv3457c DNA-directed RNA polymerase alpha chain rpoA   -0.36017
Rv2141c conserved hypothetical protein   -0.35996
Rv0703 50S ribosomal protein L23 rplW   -0.35986
Rv0651 50S ribosomal protein L10 rplJ   -0.35963
Rv2450c resuscitation-promoting factor rpfE   -0.35948
Rv3465 dTDP-4-dehydrorhamnose 3,5-epimerase rmlC   -0.35693
Rv2442c 50S ribosomal protein L21 rplU   -0.35683
Rv3803c secreted fibronectin-binding protein antigen protein fbpD   -0.35649
Rv3889c hypothetical protein   -0.35612
Rv3459c 30S ribosomal protein S11 rpsK   -0.35536
Rv2211c aminomethyltransferase gcvT   -0.35522
Rv1857 molybdate-binding lipoprotein modA   -0.35474
Rv0466 conserved hypothetical protein   -0.35473
Rv3893c PE family protein   -0.35467
Rv3623 lipoprotein lpqG   -0.35421
Rv2357c glycyl-tRNA synthetase glyS   -0.35342
Rv1009 resuscitation-promoting factor rpfB   -0.35198
Rv2439c glutamate 5-kinase protein proB   -0.35083
Rv2807 conserved hypothetical protein   -0.3501
Rv2258c transcriptional regulator   -0.35009
Rv3793 membrane indolylacetylinositol arabinosyltransferase embC   -0.35008
Rv0700 30S ribosomal protein S10 rpsJ   -0.35002
Rv2048c hypothetical protein   -0.34985
Rv0684 elongation factor G fusA1   -0.34979
Rv3099c conserved hypothetical protein   -0.34971
Rv2931 phenolpthiocerol synthesis type-I polyketide synthase ppsA   -0.34956
Rv3794 membrane indolylacetylinositol arabinosyltransferase embA   -0.34938
Rv3462c translation initiation factor IF-1 infA   -0.34934
Rv3772 histidinol-phosphate aminotransferase hisC2   -0.34904
Rv1617 pyruvate kinase pykA   -0.34753
Rv1826 glycine cleavage system H protein gcvH   -0.34709
Rv2462c trigger factor protein tig   -0.34639
Rv0717 30S ribosomal protein S14 rpsN1   -0.346
Rv3456c 50S ribosomal protein L17 rplQ   -0.34548
Rv2953 conserved hypothetical protein   -0.34547
Rv0715 50S ribosomal protein L24 rplX   -0.34484
Rv2952 methyltransferase/methylase   -0.3448
Rv2271 conserved hypothetical protein   -0.34475
Rv3547 conserved hypothetical protein   -0.34452
Rv0731c conserved hypothetical protein   -0.34432
Rv3923c ribonuclease P protein component rnpA   -0.34421
Rv1400c lipase lipH   -0.34405
Rv1590 conserved hypothetical protein   -0.34393
Rv2421c nicotinate-nucleotide adenylyltransferase nadD   -0.34347
Rv2561 conserved hypothetical protein   -0.34329
Rv0732 preprotein translocase secY   -0.34275
Rv2289 cdp-diacylglycerol pyrophosphatase cdh   -0.34267
Rv3524 conserved membrane protein   -0.34265
Rv2220 glutamine synthetase glnA1   -0.34173
Rv1193 fatty-acid-CoA ligase fadD36   -0.34136
Rv0951 succinyl-CoA synthetase beta chain sucC   -0.34066
Rv2698 conserved alanine rich membrane protein   -0.34049
Rv2937 daunorubicin-dim-transport membrane protein ABC transporter drrB   -0.3394
Rv3363c conserved hypothetical protein   -0.33888
Rv3011c glutamyl-tRNA(gln) amidotransferase subunit A gatA   -0.33832
Rv0248c succinate dehydrogenase iron-sulfur subunit   -0.33814
Rv2582 peptidyl-prolyl-cis-trans-isomerase B ppiB   -0.33736
Rv3458c 30S ribosomal protein S4 rpsD   -0.33697
Rv0199 conserved membrane protein   -0.33563
Rv2890c 30S ribosomal protein S2 rpsB   -0.33518
Rv0432 periplasmic superoxide dismutase sodC   -0.33494
Rv2956 conserved hypothetical protein   -0.33456
Rv1637c conserved hypothetical protein   -0.33385
Rv1191 conserved hypothetical protein   -0.33312
Rv2429 alkyl hydroperoxide reductase D protein ahpD   -0.33263
Rv0237 lipoprotein lpqI   -0.33249
Rv3219 transcriptional regulator whib-like whiB1   -0.33248
Rv0554 non-haem peroxidase bpoC   -0.33244
Rv2960c hypothetical protein   -0.33218
Rv3921c conserved membrane protein   -0.33188
Rv0803 phosphoribosylformylglycinamidine synthase II purL   -0.33156
Rv2001 conserved hypothetical protein   -0.33005
Rv1428c conserved hypothetical protein   -0.32974
Rv2441c 50S ribosomal protein L27 rpmA   -0.32917
Rv3598c lysyl-tRNA synthetase 1 lysS   -0.32902
Rv1215c conserved hypothetical protein   -0.32817
Rv1201c transferase   -0.32815
Rv2757c conserved hypothetical protein   -0.32799
Rv1644 23S rRNA methyltransferase tsnR   -0.3256
Rv1591 transmembrane protein   -0.32547
Rv0685 iron-regulated elongation factor tu tuf   -0.3253
Rv0933 phosphate-transport ATP-binding protein ABC transporter pstB   -0.32477
Rv2445c nucleoside diphosphate kinase ndkA   -0.3247
Rv2239c conserved hypothetical protein   -0.32411
Rv0231 acyl-CoA dehydrogenase fadE4   -0.32386
Rv3485c short-chain type dehydrogenase/reductase   -0.32381
Rv3887c conserved membrane protein   -0.32344
Rv3883c membrane-anchored mycosin mycP1   -0.32344
Rv0917 glycine betaine transport membrane protein betP   -0.32246
Rv0668 DNA-directed RNA polymerase beta chain rpoC   -0.32229
Rv3460c 30S ribosomal protein S13 rpsM   -0.32204
Rv0636 conserved hypothetical protein   -0.32183
Rv1015c 50S ribosomal protein L25 rplY   -0.32094
Rv0510 porphobilinogen deaminase hemC   -0.32074
Rv1643 50S ribosomal protein L20 rplT   -0.32027
Rv3671c membrane-associated serine protease   -0.31993
Rv1023 enolase eno   -0.31993
Rv0646c lipase/esterase lipG   -0.31944
Rv1195 PE family protein   -0.31916
Rv0156 NAD(P) transhydrogenase alpha subunit pntAb   -0.31915
Rv0652 50S ribosomal protein L7/L12 rplL   -0.31911
Rv2201 asparagine synthetase asnB   -0.31884
Rv1424c membrane protein   -0.3185
Rv2945c lipoprotein lppX   -0.31831
Rv1483 3-oxoacyl-[acyl-carrier protein] reductase fabG1   -0.31823
Rv0533c 3-oxoacyl-[acyl-carrier-protein] synthase III fabH   -0.31783
Rv3102c cell division ATP-binding protein ftsE   -0.31727
Rv2697c deoxyuridine 5-triphosphate nucleotidohydrolase dut   -0.31625
Rv3228 conserved hypothetical protein   -0.31581
Rv0462 dihydrolipoamide dehydrogenase lpd   -0.31516
Rv3392c cyclopropane-fatty-acyl-phospholipid synthase 1 cmaA1   -0.31508
Rv2844 conserved alanine rich protein   -0.31499
Rv2049c hypothetical protein   -0.31429
Rv0879c conserved membrane protein   -0.31377
Rv3628 inorganic pyrophosphatase ppa   -0.3128
Rv3389c dehydrogenase   -0.31262
Rv2294 aminotransferase   -0.31238
Rv0419 lipoprotein peptidase lpqM   -0.31218
Rv0482 UDP-N-acetylenolpyruvoylglucosamine reductase murB   -0.31207
Rv2113 membrane protein   -0.31199
Rv0308 conserved membrane protein   -0.31189
Rv0055 30S ribosomal protein rpsR1   -0.31156
Rv2908c conserved hypothetical protein   -0.31096
Rv1143 alpha-methylacyl-CoA racemase mcr   -0.31081
Rv3795 membrane indolylacetylinositol arabinosyltransferase embB   -0.31016
Rv3101c cell division protein ftsX   -0.30986
Rv3753c conserved hypothetical protein   -0.30923
Rv3722c conserved hypothetical protein   -0.30823
Rv0547c oxidoreductase   -0.3077
Rv0227c conserved membrane protein   -0.30695
Rv2954c hypothetical protein   -0.30652
Rv2511 oligoribonuclease orn   -0.30561
Rv3218 conserved hypothetical protein   -0.30499
Rv1779c hypothetical membrane protein   -0.30488
Rv0361 conserved membrane protein   -0.30434
Rv2120c conserved membrane protein   -0.30307
Rv2996c D-3-phosphoglycerate dehydrogenase serA1   -0.3029
Rv1436 glyceraldehyde 3-phosphate dehydrogenase gap   -0.30275
Rv1658 argininosuccinate synthase argG   -0.30245
Rv0013 anthranilate synthase component II trpG   -0.30222
Rv3820c polyketide synthase associated protein papA2   -0.30218
Rv0217c esterase lipW   -0.30196
Rv1641 initiation factor IF-3 infC   -0.3014
Rv3271c conserved membrane protein   -0.3013
Rv3234c conserved hypothetical protein   -0.30089
Rv0155 NAD(P) transhydrogenase alpha subunit pntAa   -0.30077
Rv0667 DNA-directed RNA polymerase beta chain rpoB   -0.30023

Genes with positive correlation ?

 Categories Enriched ?: None

Gene ?DescriptionLinks ?COG ?Correlation ?
Rv2270 lipoprotein lppN   0.44345
Rv3366 tRNA/rRNA methylase spoU   0.43599
Rv0975c acyl-CoA dehydrogenase fadE13   0.43177
Rv3162c membrane protein   0.41859
Rv0311 hypothetical protein   0.41796
Rv1862 alcohol dehydrogenase adhA   0.4165
Rv3278c conserved membrane protein   0.41568
Rv3238c conserved membrane protein   0.39836
Rv2423 hypothetical protein   0.39516
Rv0745 conserved hypothetical protein   0.39225
Rv0738 conserved hypothetical protein   0.38872
Rv0064 conserved membrane protein   0.38611
Rv2495c dihydrolipoamide S-acetyltransferase E2 component pdhC   0.38505
Rv1868 conserved hypothetical protein   0.38433
Rv2602 conserved hypothetical protein   0.38344
Rv2340c PE-PGRS family protein   0.38311
Rv3734c conserved hypothetical protein   0.38197
Rv3288c hypothetical protein usfY   0.38036
Rv3312c conserved hypothetical protein   0.37786
Rv2658c phiRv2 phage protein   0.37646
Rv3046c conserved hypothetical protein   0.36594
Rv2618 conserved hypothetical protein   0.36557
Rv1606 phosphoribosyl-AMP-1,6-cyclohydrolase hisI   0.36494
Rv2686c antibiotic-transport membrane leucine and alanine and valine rich protein ABC transporter   0.36433
Rv3087 conserved hypothetical protein   0.36234
Rv1938 epoxide hydrolase ephB   0.36057
Rv2946c polyketide synthase pks1   0.35958
Rv0937c conserved hypothetical protein   0.35944
Rv3776 conserved hypothetical protein   0.35943
Rv0518 hypothetical exported protein   0.35794
Rv1222 conserved hypothetical protein   0.35681
Rv2687c antibiotic-transport membrane leucine and valine rich protein ABC transporter   0.35675
Rv1720c conserved hypothetical protein   0.35435
Rv0786c conserved hypothetical protein   0.35391
Rv1027c transcriptional regulator kdpE   0.34988
Rv3757c osmoprotectant proW   0.3497
Rv3830c transcriptional regulator, tetR-family   0.34934
Rv1625c membrane-anchored adenylyl cyclase cya   0.34855
Rv3394c conserved hypothetical protein   0.34813
Rv0758 two component system sensor kinase phoR   0.34698
Rv3437 conserved membrane protein   0.34545
Rv0763c ferredoxin   0.34443
Rv1004c membrane protein   0.34404
Rv1246c conserved hypothetical protein   0.34346
Rv0874c conserved hypothetical protein   0.34165
Rv3466 conserved hypothetical protein   0.3416
Rv2976c uracil-DNA glycosylase ung   0.34079
Rv1725c conserved hypothetical protein   0.34043
Rv3370c DNA polymerase III alpha chain dnaE2   0.33961
Rv0376c conserved hypothetical protein   0.33845
Rv2169c conserved membrane protein   0.33727
Rv2558 conserved hypothetical protein   0.3363
Rv3287c anti-sigma factor rsbW   0.33537
Rv2153c UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenol-N-acetylglucosamine transferase murG   0.33434
Rv2366c conserved membrane protein   0.33431
Rv0487 conserved hypothetical protein   0.33331
Rv2849c cob(I)alamin adenosyltransferase cobO   0.33317
Rv0972c acyl-CoA dehydrogenase fadE12   0.33302
Rv2321c ornithine aminotransferase rocD2   0.33278
Rv2364c GTP-binding protein era   0.33186
Rv0272c hypothetical protein   0.33149
Rv3427c transposase   0.33013
Rv2342 conserved hypothetical protein   0.32915
Rv1090 cellulase celA2b   0.32827
Rv1744c membrane protein   0.32743
Rv2320c cationic amino acid transport membrane protein rocE   0.32736
Rv1434 hypothetical protein   0.32664
Rv3209 conserved proline and threonine rich protein   0.32487
Rv2830c conserved hypothetical protein   0.32305
Rv2110c proteasome beta subunit prcB   0.32178
Rv2612c phosphatidylinositol synthase pgsA1   0.32101
Rv2042c conserved hypothetical protein   0.32098
Rv3346c conserved hypothetical protein   0.32093
Rv2234 phosphotyrosine protein phosphatase ptpA   0.32012
Rv0398c secreted protein   0.31986
Rv0342 isoniazid inductible gene protein iniA   0.31977
Rv3640c transposase   0.3195
Rv0278c PE-PGRS family protein   0.3195
Rv1880c cytochrome P450 140 cyp140   0.3193
Rv2154c cell division protein ftsW   0.31924
Rv1084 conserved hypothetical protein   0.31725
Rv3637 transposase   0.31629
Rv1743 transmembrane serine/threonine-protein kinase E pknE   0.31602
Rv0262c aminoglycoside 2-N-acetyltransferase aac   0.31593
Rv2261c conserved hypothetical protein   0.31422
Rv1095 phosphate starvation-inducible protein phoH2   0.31361
Rv0960 conserved hypothetical protein   0.31146
Rv0974c acetyl-/propionyl-CoA carboxylase beta subunit accD2   0.31079
Rv2152c UDP-N-acetylmuramate-alanine ligase murC   0.31078
Rv0614 conserved hypothetical protein   0.31077
Rv0038 conserved hypothetical protein   0.31005
Rv1086 short-chain Z-isoprenyl diphosphate synthase   0.30981
Rv1557 transmembrane transport protein mmpL6   0.30923
Rv2498c citrate (pro-3s)-lyase beta subunit citE   0.30865
Rv3327 transposase   0.30802
Rv1991c conserved hypothetical protein   0.30768
Rv3618 monooxygenase   0.30737
Rv1686c conserved membrane protein   0.307
Rv1331 conserved hypothetical protein   0.30678
Rv1002c conserved membrane protein   0.30673
Rv1393c monooxygenase   0.30521
Rv3355c conserved hypothetical protein   0.30427
Rv2620c conserved membrane protein   0.3041
Rv2629 conserved hypothetical protein   0.30359
Rv3609c GTP cyclohydrolase I folE   0.30354
Rv2499c oxidase regulatory-related protein   0.30306
Rv2037c conserved membrane protein   0.30289
Rv2501c acetyl-/propionyl-CoA carboxylase alpha subunit accA1   0.30259
Rv2570 conserved hypothetical protein   0.30196
Rv2469c conserved hypothetical protein   0.30171
Rv3242c conserved hypothetical protein   0.30167
Rv3548c short-chain type dehydrogenase/reductase   0.3